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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs875971 1 rs6956179 chr7:65806659 GUSB chr7:65425675-65447246:- -0.27 -5.27 2.02E-7 Aortic root size
THCA cis rs875971 1 rs6956179 chr7:65806659 RABGEF1 chr7:66093890-66276446:+ -0.63 -13.39 5.87E-35 Aortic root size
THCA cis rs4730250 1 rs6957186 chr7:107200592 DLD chr7:107531586-107561642:+ 0.14 3.53 0.000461 Osteoarthritis
THCA cis rs875971 1 rs6957199 chr7:65978519 ASL chr7:65540776-65558321:+ -0.16 -4.21 3.07E-5 Aortic root size
THCA cis rs875971 1 rs6957199 chr7:65978519 GUSB chr7:65425675-65447246:- 0.27 5.34 1.44E-7 Aortic root size
THCA cis rs875971 1 rs6957199 chr7:65978519 RABGEF1 chr7:66093890-66276446:+ 0.66 14.13 4.09E-38 Aortic root size
THCA cis rs875971 1 rs6958271 chr7:65979331 ASL chr7:65540776-65558321:+ -0.16 -4.2 3.18E-5 Aortic root size
THCA cis rs875971 1 rs6958271 chr7:65979331 GUSB chr7:65425675-65447246:- 0.27 5.2 3.0E-7 Aortic root size
THCA cis rs875971 1 rs6958271 chr7:65979331 RABGEF1 chr7:66093890-66276446:+ 0.66 14.05 8.49E-38 Aortic root size
THCA cis rs875971 1 rs6958277 chr7:65979349 ASL chr7:65540776-65558321:+ -0.16 -4.2 3.18E-5 Aortic root size
THCA cis rs875971 1 rs6958277 chr7:65979349 GUSB chr7:65425675-65447246:- 0.27 5.2 3.0E-7 Aortic root size
THCA cis rs875971 1 rs6958277 chr7:65979349 RABGEF1 chr7:66093890-66276446:+ 0.66 14.05 8.49E-38 Aortic root size
THCA cis rs2243480 1 rs6958289 chr7:65657111 CCT6P1 chr7:65216092-65228661:+ -0.42 -6.79 3.36E-11 Diabetic kidney disease
THCA cis rs2243480 1 rs6958289 chr7:65657111 CRCP chr7:65579805-65619551:+ 0.29 4.56 6.49E-6 Diabetic kidney disease
THCA cis rs2243480 1 rs6958289 chr7:65657111 RABGEF1 chr7:66093890-66276446:+ -0.56 -6.99 9.07E-12 Diabetic kidney disease